{"id":3728,"date":"2016-02-09T00:00:00","date_gmt":"2016-02-09T00:00:00","guid":{"rendered":"http:\/\/pl-asapbio.local\/practicalguide\/"},"modified":"2025-03-28T21:38:41","modified_gmt":"2025-03-28T21:38:41","slug":"practicalguide","status":"publish","type":"post","link":"https:\/\/asapbio.org\/practicalguide\/","title":{"rendered":"Pre-prints: building a practical guide and Q&#038;As for junior scientists"},"content":{"rendered":"<p><b>Samuel L. D\u00edaz-Mu\u00f1oz<\/b><br \/>\n<i><span style=\"font-weight: 400;\">Center for Genomics and Systems Biology and Department of Biology, New York University<\/span><\/i><\/p>\n<p><span style=\"font-weight: 400;\">Pre-prints of research articles <\/span><a href=\"http:\/\/biorxiv.org\/content\/early\/2015\/07\/11\/022368\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">have been proposed<\/span><\/a><span style=\"font-weight: 400;\"> as a way to advance scientific progress, establish priority of discovery, and ameliorate some of the current shortcomings of the peer review process. All these traits are intended to accelerate the pace of innovation. Innovation, mostly, but <\/span><a href=\"http:\/\/www.pnas.org\/content\/108\/47\/18910.full\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">not invariably<\/span><\/a><span style=\"font-weight: 400;\">, is fueled by <\/span><a href=\"http:\/\/www.nber.org\/papers\/w20920.pdf\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">new researchers<\/span><\/a><span style=\"font-weight: 400;\"> with <\/span><a href=\"http:\/\/www.nber.org\/chapters\/c13246\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">different ideas<\/span><\/a><span style=\"font-weight: 400;\">. However, as academic science has <\/span><a href=\"http:\/\/iai.asm.org\/content\/83\/4\/1229.abstract\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">become more competitive<\/span><\/a><span style=\"font-weight: 400;\">, junior researchers have become especially attuned to <\/span><a href=\"http:\/\/iai.asm.org\/content\/80\/3\/891.full\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">the power of incentives<\/span><\/a><span style=\"font-weight: 400;\"> for career progress, which <\/span><a href=\"https:\/\/opensource.com\/business\/10\/8\/barriers-open-science-big-business-watson-and-crick\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">may not be aligned<\/span><\/a><span style=\"font-weight: 400;\"> with increasing the pace of scientific discovery.<span id=\"more-305\"><\/span><\/span><\/p>\n<p><a href=\"http:\/\/biorxiv.org\/content\/early\/2015\/07\/11\/022368\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">Leading<\/span><\/a> <a href=\"https:\/\/asapbio.org\/coupling-pppr\"><span style=\"font-weight: 400;\">proponents<\/span><\/a><span style=\"font-weight: 400;\"> of pre-prints (many of whom are established investigators), envision junior researchers playing critical roles in the development and adoption of preprints. Many of the <\/span><a href=\"http:\/\/journals.plos.org\/plosbiology\/article?id=10.1371\/journal.pbio.1001563\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">potential benefits<\/span><\/a><span style=\"font-weight: 400;\"> of pre-prints are said to be <\/span><a href=\"http:\/\/biorxiv.org\/content\/early\/2015\/09\/12\/022368\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">especially helpful for junior researchers<\/span><\/a><span style=\"font-weight: 400;\">. Trainees and junior investigators are also proposed to play a big role in the development of <\/span><a href=\"http:\/\/www.michaeleisen.org\/blog\/?p=1820#comment-1502679\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">pre-prints<\/span><\/a><span style=\"font-weight: 400;\"> and <\/span><a href=\"http:\/\/www.michaeleisen.org\/blog\/?p=1820\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">post-publication peer review<\/span><\/a><span style=\"font-weight: 400;\">.<\/span><\/p>\n<p><span style=\"font-weight: 400;\">It seems to follow that plans for the wide adoption of pre-prints would need buy-in from junior researchers. Yet, it is not clear that the awareness of pre-prints among new scientists is anywhere close to a necessary critical mass. The subset of junior scientists that are aware of the existence of pre-prints, are likely to carefully weigh <\/span><a href=\"http:\/\/isisthescientist.com\/2013\/08\/28\/the-morality-of-open-access-vs-increasing-diversity\/\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">the benefits and costs of any new publishing innovation<\/span><\/a><span style=\"font-weight: 400;\"> with <\/span><a href=\"http:\/\/drbecca.scientopia.org\/2013\/08\/28\/you-are-not-a-bad-person-if-you-do-the-things-you-need-to-do-to-getkeep-a-job-in-academia\/\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">their career advancement prospects<\/span><\/a><span style=\"font-weight: 400;\">.<\/span><\/p>\n<p><span style=\"font-weight: 400;\">To reach this critical mass, junior investigators need more information to understand the impact pre-prints will have on their careers. In turn, to shepherd this change in scientific publishing, proponents, policymakers, and gatekeepers must be aware of the concerns, needs, and objectives of this key constituency. New researchers especially need to understand not only <\/span><a href=\"http:\/\/www.sciencemag.org\/careers\/2010\/04\/scientists-embrace-openness\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">tangible benefits, but all potential costs<\/span><\/a><span style=\"font-weight: 400;\">. Perceived costs can be powerful disincentives. Even if potential costs are rare (<\/span><a href=\"https:\/\/blushgreengrassatafridayafternoon.wordpress.com\/2015\/01\/07\/is-being-scooped-the-flip-side-of-a-pre-print-it-was-for-us\/\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">being scooped<\/span><\/a><span style=\"font-weight: 400;\">, or being in the center of a highly contentious scientific debate) and very unlikely to be borne by any given researcher, from an individual perspective, non-established investigators are unlikely to jump in unless the tangible benefits are high. In the long-term, many issues will \u2018work themselves out\u2019 or be self-correcting, but few junior researchers are willing to be the examples and accept potential setbacks in their careers in the meantime.<\/span><\/p>\n<p><span style=\"font-weight: 400;\">In the interest of advancing discussion at the upcoming <\/span><a href=\"https:\/\/asapbio.org\/\"><span style=\"font-weight: 400;\">ASAPbio Meeting<\/span><\/a><span style=\"font-weight: 400;\"> and beyond, I have outlined a series of potential questions that young investigators may have about pre-prints. I have devised these questions based on <\/span><a href=\"https:\/\/twitter.com\/evolcoop\/status\/696731825939554305\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">personal experience<\/span><\/a><span style=\"font-weight: 400;\"> and reading of online discussions, and I outline the rationale for each question. The answers (and any additional questions!) should come from the community. To facilitate this exchange I have set up <\/span><a href=\"https:\/\/docs.google.com\/a\/nyu.edu\/document\/d\/1D1AMonSPz98ZStNuDP2ATgM4IKKqkR8hnGGvjzfSnTc\/edit?usp=sharing\" target=\"_blank\" rel=\"noopener\"><span style=\"font-weight: 400;\">an open, living document that anyone can contribute to<\/span><\/a><span style=\"font-weight: 400;\">, in order to aggregate collective knowledge on pre-prints and junior researchers. This document can serve as a resource for young investigators and also for policy makers and advocates to take into account the questions and concerns of newer trainees.<\/span><\/p>\n<p><span style=\"font-weight: 400;\">In line with the goals of ASAPbio and with a vision to facilitate action beyond the conference, I hope this resource will keep the community informed and help avoid the growing pains of a new system. Providing information and aligning incentives will go a long way to boosting and sustaining innovation in science.<\/span><\/p>\n<p>[aio_button align=\u201dcenter\u201d animation=\u201dnone\u201d color=\u201dred\u201d size=\u201dsmall\u201d icon=\u201dnone\u201d text=\u201dEdit the Google Doc\u201d relationship=\u201ddofollow\u201d url=\u201dhttps:\/\/docs.google.com\/document\/d\/1D1AMonSPz98ZStNuDP2ATgM4IKKqkR8hnGGvjzfSnTc\/edit\u201d]<br \/>\n<iframe loading=\"lazy\" src=\"https:\/\/docs.google.com\/document\/d\/1D1AMonSPz98ZStNuDP2ATgM4IKKqkR8hnGGvjzfSnTc\/pub?embedded=true\" width=\"800\" height=\"600\"><\/iframe><\/p>\n<p>[aio_button align=\u201dnone\u201d animation=\u201dnone\u201d color=\u201dgray\u201d size=\u201dsmall\u201d icon=\u201dnone\u201d text=\u201dView PDF\u201d relationship=\u201ddofollow\u201d url=\u201dhttps:\/\/asapbio.org\/wp-content\/uploads\/2016\/02\/diazmunoz_preprints_junior_scientists.pdf\u201d]<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Samuel L. D\u00edaz-Mu\u00f1oz Center for Genomics and Systems Biology and Department of Biology, New York University Pre-prints of research articles have been proposed as a way to advance scientific progress, [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[42,44],"tags":[],"class_list":["post-3728","post","type-post","status-publish","format-standard","hentry","category-guest-posts","category-preprints"],"acf":[],"_links":{"self":[{"href":"https:\/\/asapbio.org\/wp-json\/wp\/v2\/posts\/3728","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/asapbio.org\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/asapbio.org\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/asapbio.org\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/asapbio.org\/wp-json\/wp\/v2\/comments?post=3728"}],"version-history":[{"count":1,"href":"https:\/\/asapbio.org\/wp-json\/wp\/v2\/posts\/3728\/revisions"}],"predecessor-version":[{"id":4636,"href":"https:\/\/asapbio.org\/wp-json\/wp\/v2\/posts\/3728\/revisions\/4636"}],"wp:attachment":[{"href":"https:\/\/asapbio.org\/wp-json\/wp\/v2\/media?parent=3728"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/asapbio.org\/wp-json\/wp\/v2\/categories?post=3728"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/asapbio.org\/wp-json\/wp\/v2\/tags?post=3728"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}